Coding Phase 2.3

Hi!

Welcome back! This week I learned a lot of new things. According to the last meeting, the tasks that needed to be done were:

1. Clone the unetdl4j repository on my computer

2. Run the code and remove all the discrepancies

3. Update the repository 

4. Fork the XitoSBML repository 

5. Go through the XitoSBML code and look for a way to simplify the procedure of making SBML documents.

An overview of what I understood about XitoSBML

Things I learned:

1. How to commit code and push it to the remote repository from a local computer using Eclipse (commit 25bf84e).

2. How to make a pull request (https://github.com/Medha-B/unetdl4j/tree/branch_modifyPath).

3. How to delete the history of a repository using Git Bash.

4. How to merge a pull request (commit 198f4a5).

5. How to rebase code in the case of a "master: rejected non fast-forward" error.

6. How to modify the path of files to be compatible with other operating systems instead of hard-coding them, i.e. using
File rootDir = new File(directory + File.separator + "dataset" + File.separator + "small_dataset");
instead of
File rootDir = new File("C:\\Users\\Subroto\\unetdl4j\\dataset\\small_dataset");
7. How to add files in a directory using GitHub (commit 013c993).

I have also completed 50 commits overall to the unetdl4j repository!

I will work on the abstraction of code to avoid repetition and make it easier to understand and work with. Also, work under progress: crossVal.java.  

References:

1. https://stackoverflow.com/questions/30120813/how-do-i-provide-a-file-path-in-mac-os-x-while-creating-a-file-in-java

2. https://docs.github.com/en/github/collaborating-with-issues-and-pull-requests/proposing-changes-to-your-work-with-pull-requests

3. https://docs.github.com/en/github/managing-large-files/removing-files-from-a-repositorys-history